Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015900231.1_cds_XP_016450277.1_44747
CDS Infomation

[gene=LOC107775110] [db_xref=GeneID:107775110] [protein=pectinesterase-like] [protein_id=XP_016450277.1] [location=complement(join(14097..14491,15141..15467,15648..15932,16218..16887))] [gbkey=CDS]
Sequence

ATGGCGGATGCTGGAAAAAAGAAAATAGCAATTGCTGGAATTGCTTCAATTCTTGTAGTA
GCTTGTATTGTTGGTGCTGCTGTTACACTTACCAAAAAAGGAAATGATGATTCTTCAAAT
TCTCAAGTTTCAACCTCTACCAAAAATGTACAAGCCATGTGTCAACCAACACAATATAAA
GAAACTTGTGAAAAAAGTCTTTCTTCAGCCAAAAATACAAGTGATCCAAAAGAATTAATT
AAGACAGCATTTGATAGCAGTGTTAATGAAATTGCTAGTTCAATCAAGAATTCTGCTCCA
TTTAAGGAAGCTGCAAATGATCCAAGGACTAAAGATGCACTAAAAGTTTGTGATGAAGTA
CTTGATCGTTCAATCGAAGAAATTAAGAGGTCTTTTAATAAATTTGATAGTTCCGACCTC
AAAAGCTTGGTCAAGGATTATATTTATGATCTTAGGTCATGGCTTAGCTCAGCTGTTACT
TTCGAGACGACTTGTATTGACGCGTTCGCGAACACGACCGGTGATACCGGTGAGAAAATG
AAGAACCTCTTGAAAAACGCCCACGAGCTTTCCACTAATGCCCTTGATATTGTTAGTAGC
TTCGAGGAACAGGTGGAAGATTTGCAAATCTTGGGCATTAATAACAGGCGGCTGTTAACC
GTTGAAGCAGGTAACCGTAGGCTTCTTCAAGTCGCGCCCCTCAAGCCAAACGTCGTCGTT
GCTCAAGATGGCAGTGGACAACACAAGTCAATCAATGAGGCTCTTAAGACTGTGCCCCCA
AATAATGCACAGCCCTATGTCATTTTAATTAAGGCTGGAATTTACAATGAGTATGTTCAA
GTTGCTAATACAATGACCAATGTTGTCTTTATTGGTGAAGGCCCAAACAAGACCAAAATA
ACTGGCAACAAAAATTACCTAGATGGTCTCCCAGTTTTCAGTACTGCCACTGTTGCCATC
TCGGGACAAGGATTCGTGGCGAAGGATATCGGATTCGAGAACTCAGCAGGACCGTTAAAA
CATCAAGCTGTTGCACTCCGTGTTTCAGCTGAAATGGCAGTGTTCCAAAACTGTCAAATA
GATGGATACCAATACACCCTTATGACTCATGTTGGCAGACAATTATACCGTGACTGTACC
ATCACTGGAACCATCGATTTCATCTTTGGAGACGCTGTGGCTGTGTTCCAGAATTGCAAA
TTGATCGCGAGAAAGCCCGAGGAGATGCAGACGCAAGCGATCACAATCGCTGCTCAGGGA
AGGAACCAGCAATTTGGAACAGGTGCGATCATTATACAGAATTGCACGATTACAGCTGAG
CCAGCTCTACTCGCCATCAACCCGCCACGTAACAAGGCATACCTCGGACGTCCATGGAAG
TTATACTCAAGGACAATAATTATGCAATCTCAGATTGATGGATTCATTGATCCTGAAGGA
TGGACACCATGGGCTGGTACTTTTGCCCTTGACACTCTATATTTTGTTGAATATCAAAAC
AGAGGTCCAGGTGCAAACACAGATAAGAGGGTAAATTGGAAGAATTATATCAAGAATCCA
ACACCAGATGTTATTGCTAAATTTACTCCTGGAGTTGTGCTTAAAGGTGGTGATAATACT
GATACTTGGGTTACTAAAACTGGTGTCCCATATGAACCAGGGATGATGAAGGTGTAA

Peptide Sequence

PEP ID

XP_016450277.1
PEP Infomation

PREDICTED: pectinesterase-like [Nicotiana tabacum]
Sequence

MADAGKKKIAIAGIASILVVACIVGAAVTLTKKGNDDSSNSQVSTSTKNVQAMCQPTQYK
ETCEKSLSSAKNTSDPKELIKTAFDSSVNEIASSIKNSAPFKEAANDPRTKDALKVCDEV
LDRSIEEIKRSFNKFDSSDLKSLVKDYIYDLRSWLSSAVTFETTCIDAFANTTGDTGEKM
KNLLKNAHELSTNALDIVSSFEEQVEDLQILGINNRRLLTVEAGNRRLLQVAPLKPNVVV
AQDGSGQHKSINEALKTVPPNNAQPYVILIKAGIYNEYVQVANTMTNVVFIGEGPNKTKI
TGNKNYLDGLPVFSTATVAISGQGFVAKDIGFENSAGPLKHQAVALRVSAEMAVFQNCQI
DGYQYTLMTHVGRQLYRDCTITGTIDFIFGDAVAVFQNCKLIARKPEEMQTQAITIAAQG
RNQQFGTGAIIIQNCTITAEPALLAINPPRNKAYLGRPWKLYSRTIIMQSQIDGFIDPEG
WTPWAGTFALDTLYFVEYQNRGPGANTDKRVNWKNYIKNPTPDVIAKFTPGVVLKGGDNT
DTWVTKTGVPYEPGMMKV

Transcript Sequence

Gene sequence data has not been registered.